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[Other] A summary of 20 classic biology online tools

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Posted on 12/6/2018 8:28:12 AM | | |
Promoter Scan
Function: Promoter prediction
Website:https://www-bimas.cit.nih.gov/molbio/proscan/



ORF Finder
Function: ORF prediction
Website:https://www.ncbi.nlm.nih.gov/orffinder/



NCBI-BLAST
Function: Sequence alignment
Website:https://blast.ncbi.nlm.nih.gov/Blast.cgi



MUSCLE
Function: Multi-sequence alignment with relatively fast running speed
Website:http://www.ebi.ac.uk/Tools/msa/muscle/#



Clustal Omega
Function: Multi-sequence alignment of DNA, RNA, and protein
Website:http://www.ebi.ac.uk/Tools/msa/clustalo/



ClustalW2
Function: Widely used multi-sequence alignment
Website:http://www.ebi.ac.uk/Tools/msa/clustalw2/



T-Coffee
Function: High accuracy, slow multi-sequence alignment
Website:http://www.ebi.ac.uk/Tools/msa/tcoffee/



SimiTriX-SimiTetra
Function: Multi-sequence alignment similarity display
Website:http://cotton.hzau.edu.cn/EN/tools/BioERCP/simitrix.php



Venn Picture
Function: Draw Venn diagrams
Website:http://www.biovenn.nl/index.php



Venn Picture
Function: Draw Venn diagrams
Website:http://bioinformatics.psb.ugent.... calculate_venn.htpl



Venn Picture
Function: Draw Venn diagrams
Website:http://bioinfogp.cnb.csic.es/tools/venny/index.html



WEGO
Function: Draw GO annotation result graph
Website:http://wego.genomics.org.cn/cgi-bin/wego/index.pl



CIRCOS
Function: Draw circle diagrams
Website:http://mkweb.bcgsc.ca/tableviewer/visualize/



CIRCexplorer
Function: Perform circRNA analysis
Website:http://circexplorer2.readthedocs.io/en/latest/



iPath
Function: Perform online analysis of visual pathway maps
Website:http://pathways.embl.de/



KEGG
Function: Annotate the metabolic pathways of genes
Website:http://www.kegg.jp/blastkoala/



UCSC
Function: Genome visualization
Website:http://genome.ucsc.edu/index.html



IBS
Function: Draw a schematic diagram of the sequence structure
Website:http://ibs.biocuckoo.org/online.php



RAP
Function: Online analysis of RNA-seq
Website:https://bioinformatics.cineca.it/rap/



AUGUSTUS
Function: Gene exon intron, UTR, annotation
Website:http://bioinf.uni-greifswald.de/webaugustus/prediction/create



GSDS
Function: Gene exon intron, UTR, domain and other regional characteristics display
Website:http://gsds.cbi.pku.edu.cn/





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